PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s779791g002
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HSF
Protein Properties Length: 280aa    MW: 31093.3 Da    PI: 6.7984
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s779791g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind95.74.8e-3039118290
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                        Fl+k+y+i+e  e++e+isw e+g+sfvv+++ efa+++Lp +Fkh+nf+SFvRQLn+YgF+kv  ++         weF++++F +++
  PDK_30s779791g002  39 FLTKTYQIVEAWETDEVISWAEKGRSFVVWKPVEFARDLLPAHFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANENFLHSS 118
                        9****************************************************************999.........*******97765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.3E-3430117IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.9E-4135141IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.04E-2735117IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004479.3E-2639118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-183962IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-187789IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434078102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-1890102IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDAPEVQGTV TETPGQKGGG GRDGVRMSAT SGGGGPAPFL TKTYQIVEAW ETDEVISWAE  60
KGRSFVVWKP VEFARDLLPA HFKHNNFSSF VRQLNTYGFR KVVPDRWEFA NENFLHSSSS  120
TSSPPPPPPP QQQLLDLTNE NEKLKKENNI LSNEVAQAKQ RCGELLGVLS TFVDVGKLDI  180
GLLMQEKGLM EAAIWREEPM KKKGVEEEVG KKEEGLKLFG VLLKGFEGEE SKKTRREKRG  240
RCDEGGEMCG AGERPMKMGF EAPWMGTSTP VQQGSRKIYN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-1922103993Heat shock factor protein 1
5d5v_B1e-1922103993Heat shock factor protein 1
5d5v_D1e-1922103993Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008797267.11e-148PREDICTED: heat stress transcription factor B-1-like
SwissprotP223351e-59HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLM0RMN65e-94M0RMN6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P30120_0011e-93(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-40heat shock transcription factor B4